Groups
Groups allow to structure a BibTeX database in a tree-like way that is similar to organizing files on disk in directories and subdirectories. The two main differences are:
While a file is always located in exactly one directory, an entry may be contained in more than one group.
Groups may use certain criteria to dynamically define their content. New entries that match these criteria are automatically contained in these groups. This feature is not available in common file systems, but in several Email clients (e.g. Thunderbird and Opera).
Selecting a group shows the entries contained in that group. Selecting multiple groups shows the entries contained in any group (union) or those contained in all groups (intersection), depending on the current settings. All this is explained in detail below.
Group definitions are database-specific; they are saved as a @COMMENT block in the .bib-file and are shared among all users. (Future versions of JabRef might support user-dependent groups.)
The groups interface is shown in the side pane on the left of the screen. It can be toggled on or off by pressing Ctrl + Shift + G or by the groups button in the toolbar. The interface has several buttons, but most functions are accessed via a context ("right-click") menu. Drag and Drop is also supported.
To manually assign entries to a group, press the New Group button, enter a name for the group, then press OK, leaving all values at their defaults. Now select the entries to be assigned to the group and use Drag and Drop to the group, or the option Add to group in the context menu. Finally select the group to see its content (which should be the entries you just assigned).
In case you want automatically fill the groups content based on keywords, do the following: Press the New Group button, enter a name for the group, and select the option to dynamically group entries by searching a field for a keyword. Enter the keyword to search for, then click OK. Finally select the group to see its content (which should be all entries whose keywords field contains the keyword you specified).
In case a group should be filled with entries containing defined search strings, do the following: Press the New Group button, enter a name for the group, and select the option to dynamically group entries by a free-form search expression. Enter author=smith as a search expression (replace smith with a name that actually occurs in your database) and click OK. Finally select the group to see its content (which should be all entries whose author field contains the name you specified).
You can also intersact or unition groups: Create two different groups (e.g. as described above). Click the Settings button and make sure that Union is selected. Now select both groups. You should see all entries contained in any of the two groups. Click Settings again and select Intersection. Now you should see only those entries contained in both groups (which might be none at all, or exactly the same entries as before in case both groups contain the same entries).
JabRef allows you to easily identify groups that overlap with the currently selected groups (i.e. that contain at least one entry that is also contained in the currently selected groups). Click Settings and activate the option to highlight overlapping groups. Then select a group that overlaps with other groups. The other groups should be highlighted.
In JabRef there are four different types of groups:
The group All Entries, which -- as the name suggests -- contains all entries, is always present and cannot be edited or removed.
Static groups behave like directories on disk and contain only those entries that you explicitly assign to them.
Dynamic groups based on keyword search contain entries in which a certain BibTeX field (e.g.
keywords) contains a certain keyword (e.g.electrical). This method does not require manual assignment of entries, but uses information that is already present in the database. If all entries in your database have suitable keywords in theirkeywordsfield, using this type of group might be the best choice.Dynamic groups based on free-form search expressions contain entries that match a specified search expression, using the same syntax as the search panel on the side pane. This syntax supports logical operators (
AND,OR,NOT) and allows to specify one or more BibTeX fields to search, facilitating more flexible group definitions than a keyword search (e.g.author=smith and title=electrical).
Every group that you create is of one of the last three types. The group editing dialog, which is invoked by double-clicking on a group, shows a short description of the selected/edited group in plain English.
Just like directories, groups are structured like a tree, with the group All Entries at the root. By right-clicking on a group you can add a new group to the tree, either at the same level as the selected group or as a subgroup of it. The New Group button lets you create a new subgroup of the group All Entries, regardless of the currently selected group(s). The context menu also allows to remove groups and/or subgroups, to sort subgroups alphabetically, or to move groups to a different location in the tree. The latter can also be done by Drag and Drop, with the restriction that Drag and Drop does not support changing the order of a group's subgroups.
Undo and redo is supported for all edits.
Defines the name of the group, as displayed in the group panel.
A description of the group, to help you remember what it is about. Hovering the mouse over the group name displays this description.
An icon can be displayed in front of the group name. Choose your favorite icon among the ones available at https://materialdesignicons.com/, and enter its name of the field Icon. The color of the icon can be set in to the field Color.
Remark: outdated: The new interface (JabRef 5.0) displays a list of 5 choices under "Collect by".
Static groups are populated only by explicit manual assignment of entries. After creating a static group you select the entries to be assigned to it, and use either Drag and Drop or the main table's context menu to perform the assignment. To remove entries from a static group, select them and use the main table's context menu. There are no options to be configured.
This method of grouping requires that all entries have a unique citation key. In case of missing or duplicate citation keys, the assignment of the affected entries cannot be correctly restored in future sessions.
The content of a dynamic group is defined by a logical condition. Only entries that meet this condition are contained in the group. This method uses the information stored in the database itself, and updates dynamically whenever the database changes.
Two types of conditions can be used:
Searching a field for a keyword
This method groups entries in which a specified BibTeX field (e.g. keywords) contains a specified search term (e.g. electrical). Obviously, for this to work, the grouping field must be present in every entry, and its content must be accurate. The above example would group all entries referring to something electrical. Using the field author allows to group entries by a certain author, etc. The search can either be done as a plain-text or a regular expression search. In the former case, JabRef allows to manually assign/remove entries to/from the group by simply appending/removing the search term to/from the content of the grouping field. This makes sense only for the keywords field or for self-defined fields, but obviously not for fields like author or year.
Using a free-form search expression
This is similar to the above, but rather than search a single field for a single search term, the search expression syntax can be used, which supports logical operators (AND, OR, NOT) and allows to search multiple BibTeX fields. For example, the search expression keywords=regression and not keywords=linear groups entries concerned with non-linear regression.
In the groups view, dynamic groups are shown in italics by default. This can be turned off in the preferences (Options → Preferences → Groups, box "Show dynamic groups in italics").
By default, a group is independent of its position in the groups tree: When selected, only the group's contents are shown. However, especially when using dynamic groups, it is often useful to define a subgroup that refines its supergroup, i.e., when selected, entries contained in both groups are displayed. For example, create a supergroup containing entries with the keyword distribution and a subgroup containing entries with the keyword gauss that refines this supergroup. Selecting the subgroup now displays entries that match both conditions, i.e. are concerned with Gaussian distributions. Note that items that only belong to the subgroup gauss will not be shown, i.e. for an item to be displayed when selecting gauss it is necessary to be assigned to both the subgroup gauss and the supergroup distribution. By adding another refining subgroup for laplace to the original supergroup, the grouping can easily be extended. In the groups tree, refining groups have a special icon (this can be turned off in the preferences).
The logical complement to a refining group is a group that includes its subgroups, i.e. when selected, not only the group's own entries, but also its subgroups' entries are shown. In the groups tree, this type of group has a special icon (this can be turned off in the preferences).
In other words, this defines which entries are displayed when this group is selected:
independant. Displays only this group's entries.
intersection. Displays entries contained in both this group and its supergroup.
union. Displays entries contained in this group or its subgroups.
Selecting a group shows the entries contained in that group by highlighting them and, depending on the settings (accessible by clicking the Settings button), moving them to the top of the list and/or selecting them. These options are identical to those available for the regular search.
When multiple groups are selected, either the union or the intersection of their content is shown, depending on the current settings. This allows to quickly combine multiple conditions, e.g. if you have a static group Extremely Important to which you assign all extremely important entries, you can view the extremely important entries in any other group by selecting both groups (this requires to have Intersection selected in the settings).
When viewing the contents of the selected group(s), a search can be performed within these contents using the regular search facility.
The Settings button offers an option to highlight overlapping groups. If this is activated, upon selection of one or more groups, all groups that contain at least one of the entries contained in the currently selected group(s) are highlighted. This quickly identifies overlap between the groups' contents. You might, for example, create a group To Read that contains all entries which you plan to read. Now, whenever you select any group, the group To Read is highlighted if the selected group contains entries that you plan to read.
The Settings button offers also an option to automatically assign new entries to selected groups. If this is activated, upon selection of one or more groups, all the new entries created will be assigned to the selected groups. This work both for entries created from menu button or entries pasted from clipboard. This option can also be enabled/disabled from the menu "option > preferences > group".
After mastering the grouping concepts described above, the following advanced features might come in handy.
By clicking the Automatically create groups for database button, you can quickly create a set of groups appropriate for your database. This feature will gather all words found in a specific field of your choice, and create a group for each word. This is useful for instance if your database contains suitable keywords for all entries. By autogenerating groups based on the keywords field, you should have a basic set of groups at no cost.
You can also specify characters to ignore, for instance commas used between keywords. These will be treated as separators between words, and not part of them. This step is important for combined keywords such as laplace distribution to be recognized as a single semantic unit. (You cannot use this option to remove complete words. Instead, delete the unwanted groups manually after they were created automatically.)
The Refresh button updates the entry table to reflect the current groups selection. This is usually done automatically, but in rare occasions (e.g. after a group-related undo/redo) a manual refresh is required.
If a refining group is a subgroup of a group that includes its subgroups -- the refining group's siblings --, these siblings are ignored when the refining group is selected.
